Publications

This is a list of publications where I’m involved, grouped by projects, and in chronological order.

FinnGen 2019-Present


Elliott A et al.(2024). “Distinct and shared genetic architectures of gestational diabetes mellitus and type 2 diabetes.” Nature Genetics. https://doi.org/10.1038/s41588-023-01607-4.

BibTex record

@Article{Elliott:2024,
  author = {Amanda Elliott and Raymond K. Walters and Matti Pirinen and Mitja Kurki and Nella Junna and Jacqueline I. Goldstein and Mary Pat Reeve and Harri Siirtola and Susanna M. Lemmelä and Patrick Turley and Elisa Lahtela and Juha Mehtonen and Kadri Reis and Abdelrahman G. Elnahas and Anu Reigo and Priit Palta and Tõnu Esko and Reedik Mägi and Andres Metspalu and Mari Nelis and Lili Milani and Georgi Hudjashov and Haari Siirtola and Elisa Lahtinen and Aarno Palotie and Mark J. Daly and Elisabeth Widén and Estonian Biobank Research Team and {FinnGen}},
  journal = {Nature Genetics},
  title = {Distinct and shared genetic architectures of gestational diabetes mellitus and type 2 diabetes},
  url = {https://doi.org/10.1038/s41588-023-01607-4},
  year = {2024},
} 

Siirtola H et al.(2023). “LifeTrack: decades of EHR data in a single view.” In 2023 27th International Conference Information Visualisation (IV), 390-395. https://doi.org/10.1109/IV60283.2023.00072.

BibTex record

@InProceedings{Siirtola:2023,
  author = {Harri Siirtola and Roope Raisamo and Marianna Niemi and Mary Pat Reeve and Javier Gracia-Tabuenca and Vincent Llorens and Shanmukha Sampath Padmanabhuni},
  booktitle = {2023 27th International Conference Information Visualisation (IV)},
  pages = {390-395},
  publisher = {IEEE},
  title = {{LifeTrack}: decades of {EHR} data in a single view},
  url = {https://doi.org/10.1109/IV60283.2023.00072},
  year = {2023},
} 

Jones SE et al.(2023). “The public health impact of poor sleep on severe COVID-19, influenza and upper respiratory infections.” EBioMedicine, 93. https://doi.org/10.1016/j.ebiom.2023.104630.

BibTex record

@Article{Jones:2023,
  author = {Samuel E. Jones and Fahrisa I. Maisha and Satu J. Strausz and Vilma Lammi and Brian E. Cade and Anniina Tervi and Viola Helaakoski and Martin E. Broberg and {FinnGen} and Jacqueline M. Lane and Susan Redline and Richa Saxena and Hanna M. Ollila},
  journal = {EBioMedicine},
  title = {The public health impact of poor sleep on severe {COVID}-19, influenza and upper respiratory infections},
  url = {https://doi.org/10.1016/j.ebiom.2023.104630},
  volume = {93},
  year = {2023},
} 

Viippola E et al.(2023). “Data Resource Profile: Nationwide registry data for high-throughput epidemiology and machine learning (FinRegistry).” International Journal of Epidemiology, 52(4), e195-e200. https://doi.org/10.1093/ije/dyad091.

BibTex record

@Article{Viippola:2023,
  author = {Essi Viippola and Sara Kuitunen and Rodosthenis S Rodosthenous and Andrius Vabalas and Tuomo Hartonen and Pekka Vartiainen and Joanne Demmler and Anna-Leena Vuorinen and Aoxing Liu and Aki S Havulinna and Vincent Llorens and Kira E Detrois and Feiyi Wang and Matteo Ferro and Antti Karvanen and Jakob German and Sakari Jukarainen and Javier Gracia-Tabuenca and Tero Hiekkalinna and Sami Koskelainen and Tuomo Kiiskinen and Elisa Lahtela and Susanna Lemmelä and Teemu Paajanen and Harri Siirtola and Mary Pat Reeve and Kati Kristiansson and Minna Brunfeldt and Mervi Aavikko and Finn Gen and Markus Perola and Andrea Ganna},
  journal = {International Journal of Epidemiology},
  number = {4},
  pages = {e195-e200},
  title = {Data Resource Profile: Nationwide registry data for high-throughput epidemiology and machine learning ({FinRegistry})},
  url = {https://doi.org/10.1093/ije/dyad091},
  volume = {52},
  year = {2023},
} 

Tyrmi JS et al.(2023). “Genetic Risk Factors Associated With Preeclampsia and Hypertensive Disorders of Pregnancy.” JAMA Cardiology, 8(7), 674-683. https://doi.org/10.1001/jamacardio.2023.1312.

BibTex record

@Article{Tyrmi:2023,
  author = {Jaakko S. Tyrmi and Tea Kaartokallio and A. Inkeri Lokki and Tiina Jä{ä}skeläinen and Eija Kortelainen and Sanni Ruotsalainen and Juha Karjalainen and Samuli Ripatti and Anna Kivioja and Triin Laisk and Johannes Kettunen and Anneli Pouta and Katja Kivinen and Eero Kajantie and Seppo Heinonen and Juha Kere and Hannele Laivuori and FinnGen Project {FINNPEC Study Group} and {the Estonian Biobank Research Team}},
  journal = {JAMA Cardiology},
  number = {7},
  pages = {674-683},
  title = {{Genetic Risk Factors Associated With Preeclampsia and Hypertensive Disorders of Pregnancy}},
  url = {https://doi.org/10.1001/jamacardio.2023.1312},
  volume = {8},
  year = {2023},
} 

Ågren R et al.(2023). “Major Genetic Risk Factors for Dupuytren’s Disease Are Inherited From Neandertals.” Molecular Biology and Evolution, 40(6), msad130. https://doi.org/10.1093/molbev/msad130.

BibTex record

@Article{Agren:2023,
  author = {Richard Ågren and Snehal Patil and Xiang Zhou and Kristoffer Sahlholm and Svante Pääbo and Hugo Zeberg and {FinnGen}},
  journal = {Molecular Biology and Evolution},
  number = {6},
  pages = {msad130},
  title = {Major Genetic Risk Factors for {Dupuytren's Disease} Are Inherited From {Neandertals}},
  url = {https://doi.org/10.1093/molbev/msad130},
  volume = {40},
  year = {2023},
} 

Kurki MI et al.(2023). “FinnGen provides genetic insights from a well-phenotyped isolated population.” Nature, 613(7944), 508-518. https://doi.org/10.1038/s41586-022-05473-8.

BibTex record

@Article{Kurki:2023,
  author = {Mitja I Kurki and Juha Karjalainen and Priit Palta and Timo P Sipilä and Kati Kristiansson and Kati M Donner and Mary P Reeve and Hannele Laivuori and Mervi Aavikko and Mari A Kaunisto and others},
  journal = {Nature},
  number = {7944},
  pages = {508--518},
  title = {FinnGen provides genetic insights from a well-phenotyped isolated population},
  url = {https://doi.org/10.1038/s41586-022-05473-8},
  volume = {613},
  year = {2023},
} 

Ruotsalainen SE et al.(2022). “Inframe insertion and splice site variants in MFGE8 associate with protection against coronary atherosclerosis.” Communications biology, 5(1), 802. https://helda.helsinki.fi/server/api/core/bitstreams/20f48638-a2ac-4af2-8318-e4c750504bc9/content.

BibTex record

@Article{Ruotsalainen:2022,
  author = {Sanni E Ruotsalainen and Ida Surakka and Nina Mars and Juha Karjalainen and Mitja Kurki and Masahiro Kanai and Kristi Krebs and Sarah Graham and Pashupati P Mishra and Binisha H Mishra and Juha Sinisalo and Priit Palta and Terho Lehtimäki and Olli Raitakari and Esko Tõnu and Metspalu Andres and Mägi Reedik and Nelis Mari and Lili Milani and Yukinori Okada and Aarno Palotie and Mark Daly and Outi Tuovila and Raimo Pakkanen and Samuli Ripatti and Schleutker Johanna and Arvas Mikko and Carpén Olli and Hinttala Reetta and Kettunen Johannes and Mannermaa Arto and Laukkanen Jari and Rheumatology Group Eklund Kari and Palomäki Antti and Isomäki Pia and Pirilä Laura and Kaipiainen-Seppänen Oili and Huhtakangas Johanna and Lertratanakul Apinya and Close David and Hochfeld Marla and Bing Nan and Gordillo Jorge Esparza and Tasanen Kaisa and Huilaja Laura and Hannula-Jouppi Katariina and Salmi Teea and Peltonen Sirkku and Koulu Leena and Wu Ying and Choy David and Odontology Group Pussinen Pirkko and Salminen Aino and Salo Tuula and Rice David and Nieminen Pekka and Palotie Ulla and Siponen Maria and Suominen Liisa and Mäntylä Päivi and Gursoy Ulvi and Anttonen Vuokko and Sipilä Kirsi and Justin Wade Davis and Danjuma Quarless and Slavé Petrovski and Eleonor Wigmore and Adele Mitchell and Benjamin Sun and Ellen Tsai and Denis Baird and Paola Bronson and Ruoyu Tian and Yunfeng Huang and Joseph Maranville and Elmutaz Mohammed and Samir Wadhawan and Erika Kvikstad and Minal Caliskan and Diana Chang and Tushar Bhangale and Kirill Shkura and Victor Neduva and Xing Chen and Åsa Hedman and Karen S King and Padhraig Gormley and Jimmy Liu and Clarence Wang and Ethan Xu and Franck Auge and Clement Chatelain and Deepak Rajpal and Dongyu Liu and Katherine Call and Tai-He Xia and Matt Brauer and Huilei Xu and Amy Cole and Jonathan Chung and Jaison Jacob and Katrina {de Lange} and Jonas Zierer and Mitja Kurki and Aki Havulinna and Juha Mehtonen and Priit Palta and Shabbeer Hassan and Pietro Della Briotta Parolo and Wei Zhou and Mutaamba Maasha and Susanna Lemmelä and Manuel Rivas and Arto Lehisto and Vincent Llorens and Mari E Niemi and Henrike Heyne and Kimmo Palin and Javier Garcia-Tabuenca and Harri Siirtola and Tuomo Kiiskinen and Jiwoo Lee and Kristin Tsuo and Kati Kristiansson and Kati Hyvärinen and Jarmo Ritari and Miika Koskinen and Katri Pylkäs and Marita Kalaoja and Minna Karjalainen and Tuomo Mantere and Eeva Kangasniemi and Sami Heikkinen and Samuel Heron and Dhanaprakash Jambulingam and Venkat Subramaniam Rathinakannan and Nina Pitkänen and Lila Kallio and Sirpa Soini and Eero Punkka and Teijo Kuopio and Jalanko Anu and Shen Huei-Yi and Kajanne Risto and Aavikko Mervi and Kanai Masahiro and Lahtela L. Elisa and Kaunisto Mari and Kilpeläinen Elina and Sipilä Timo P. and Brein Georg and Dada Oluwaseun Alexander and Ghazal Awaisa and Shcherban Anastasia and Genotyping Donner Kati and Loukola Anu and Laiho Päivi and Sistonen Tuuli and Kaiharju Essi and Laukkanen Markku and Järvensivu Elina and Lähteenmäki Sini and Männikkö Lotta and Wong Regis and Mattsson Hannele and Koskelainen Sami and Hiekkalinna Tero and Paajanen Teemu and Pärn Kalle and Luo Shuang and Sinha Vishal and Gracia-Tabuenca Javier and Helminen Mika and Luukkaala Tiina and Vähätalo Iida and Jyrhämä Tero and Marco Hautalahti and Laura Mustaniemi and Mirkka Koivusalo and Sarah Smith and Tom Southerington},
  journal = {Communications biology},
  number = {1},
  pages = {802},
  title = {Inframe insertion and splice site variants in {MFGE8} associate with protection against coronary atherosclerosis},
  url = {https://helda.helsinki.fi/server/api/core/bitstreams/20f48638-a2ac-4af2-8318-e4c750504bc9/content},
  volume = {5},
  year = {2022},
} 

Siirtola H et al.(2022). “Glyph-based visualization of health trajectories.” In 2022 26th International Conference Information Visualisation (IV), 424-431. https://doi.org/10.1109/IV56949.2022.00075.

BibTex record

@InProceedings{Siirtola:2022,
  author = {Harri Siirtola and Javier Gracia-Tabuenca and Roope Raisamo and Marianna Niemi and Mary Pat Reeve and Tarja Laitinen},
  booktitle = {2022 26th International Conference Information Visualisation (IV)},
  month = {7},
  pages = {424-431},
  publisher = {IEEE},
  title = {Glyph-based visualization of health trajectories},
  url = {https://doi.org/10.1109/IV56949.2022.00075},
  year = {2022},
} 

Rodosthenous RS et al.(2022). “Recontacting biobank participants to collect lifestyle, behavioural and cognitive information via online questionnaires: lessons from a pilot study within FinnGen.” BMJ open, 12(10), e064695.

BibTex record

@Article{Rodosthenous:2022,
  author = {Rodosthenis S Rodosthenous and Mari EK Niemi and Lila Kallio and Merja Perala and Perttu Terho and Theresa Knopp and Eero Punkka and Enni M Makkonen and Paula Nurmi and Johanna Makela and others},
  journal = {BMJ open},
  number = {10},
  pages = {e064695},
  title = {Recontacting biobank participants to collect lifestyle, behavioural and cognitive information via online questionnaires: lessons from a pilot study within FinnGen},
  volume = {12},
  year = {2022},
} 

Palomäki A et al.(2021). “Lifetime risk of rheumatoid arthritis-associated interstitial lung disease in MUC5B mutation carriers.” ANNALS OF THE RHEUMATIC DISEASES, 80(12), 1530-1536. https://helda.helsinki.fi/server/api/core/bitstreams/a5d908f1-9879-48d4-88c2-4b94d52d70ff/content.

BibTex record

@Article{Palomaki:2021,
  author = {Antti Palomäki and Aarno Palotie and Jukka Koskela and Kari K. Eklund and Matti Pirinen and Samuli Ripatti and Tarja Laitinen and Nina Mars},
  journal = {ANNALS OF THE RHEUMATIC DISEASES},
  month = {12},
  number = {12},
  pages = {1530--1536},
  title = {Lifetime risk of rheumatoid arthritis-associated interstitial lung disease in MUC5B mutation carriers},
  url = {https://helda.helsinki.fi/server/api/core/bitstreams/a5d908f1-9879-48d4-88c2-4b94d52d70ff/content},
  volume = {80},
  year = {2021},
} 

Liuska PJ et al.(2021). “Association of the MYOC p.(Gln368Ter) Variant with Glaucoma in a Finnish Population.” JAMA ophthalmology, 139(7), 762-768. https://jamanetwork.com/journals/jamaophthalmology/fullarticle/2780580.

BibTex record

@Article{Liuska:2021,
  author = {Perttu J Liuska and Susanna Lemmelä and Aki S Havulinna and Kai Kaarniranta and Hannu Uusitalo and Hannele Laivuori and Tuomo Kiiskinen and Mark J Daly and Aarno Palotie and Joni A Turunen and Howard Jacob and Athena Matakidou and Heiko Runz and Sally John and Robert Plenge and Julie Hunkapiller and Meg Ehm and Dawn Waterworth and Caroline Fox and Anders Malarstig and Kathy Klinger and Kathy Call and Tomi Mäkelä and Jaakko Kaprio and Petri Virolainen and Kari Pulkki and Terhi Kilpi and Markus Perola and Jukka Partanen and Anne Pitkäranta and Riitta Kaarteenaho and Seppo Vainio and Kimmo Savinainen and Veli-Matti Kosma and Urho Kujala and Jeff Waring and Bridget Riley-Gillis and Jimmy Liu and Shameek Biswas and Josh Hoffman and Dorothee Diogo and Catherine Marshall and Xinli Hu and Samuli Ripatti and Johanna Schleutker and Tiina Wahlfors and Olli Carpen and Johanna Myllyharju and Johannes Kettunen and Reijo Laaksonen and Arto Mannermaa and Juha Paloneva and Hilkka Soininen and Valtteri Julkunen and Anne Remes and Reetta Kälviäinen and Mikko Hiltunen and Jukka Peltola and Pentti Tienari and Juha Rinne and Adam Ziemann and Jeffrey Waring and Sahar Esmaeeli and Nizar Smaoui and Anne Lehtonen and Susan Eaton and Sanni Lahdenperä and Janet {van Adelsberg} and John Michon and Geoff Kerchner and Natalie Bowers and Edmond Teng and John Eicher and Vinay Mehta and Padhraig Gormley and Kari Linden and Christopher Whelan and Fanli Xu and David Pulford and Martti Färkkilä and Sampsa Pikkarainen and Airi Jussila and Timo Blomster and Mikko Kiviniemi and Markku Voutilainen and Bob Georgantas and Graham Heap and Fedik Rahimov and Keith Usiskin and Tim Lu and Danny Oh and Dermot Reilly and Kirsi Kalpala and Melissa Miller and Linda McCarthy and Kari Eklund and Antti Palomäki and Pia Isomaki and Laura Pirilä and Oili Kaipiainen-Seppänen and Johanna Huhtakangas and Apinya Lertratanakul and David Close and Marla Hochfeld and Nan Bing and Jorge Esparza Gordillo and Nina Mars and Tarja Laitinen and Margit Pelkonen and Paula Kauppi and Hannu Kankaanranta and Terttu Harju and Steven Greenberg and Hubert Chen and Jo Betts and Soumitra Ghosh and Veikko Salomaa and Teemu Niiranen and Markus Juonala and Kaj Metsärinne and Mika Kähönen and Juhani Junttila and Markku Laakso and Jussi Pihlajamäki and Juha Sinisalo and Marja-Riitta Taskinen and Tiinamaija Tuomi and Jari Laukkanen and Ben Challis and Andrew Peterson and Audrey Chu and Jaakko Parkkinen and Anthony Muslin and Heikki Joensuu and Tuomo Meretoja and Lauri Aaltonen and Annika Auranen and Peeter Karihtala and Saila Kauppila and Päivi Auvinen and Klaus Elenius and Relja Popovic and Jennifer Schutzman and Andrey Loboda and Aparna Chhibber and Heli Lehtonen and Stefan McDonough and Marika Crohns and Diptee Kulkarni and Terhi Ollila},
  journal = {JAMA ophthalmology},
  number = {7},
  pages = {762-768},
  title = {Association of the {MYOC} p.({Gln368Ter}) Variant with Glaucoma in a Finnish Population},
  url = {https://jamanetwork.com/journals/jamaophthalmology/fullarticle/2780580},
  volume = {139},
  year = {2021},
} 

Ruotsalainen SE et al.(2020). “An expanded analysis framework for multivariate GWAS connects inflammatory biomarkers to functional variants and disease.” EUROPEAN JOURNAL OF HUMAN GENETICS, 29(2), 309-324. https://doi.org/10.1038/s41431-020-00730-8.

BibTex record

@Article{Ruotsalainen:2020,
  author = {Sanni E. Ruotsalainen and Juulia J. Partanen and Anna Cichonska and Jake Lin and Christian Benner and Ida Surakka and {FinnGen} and Aarno Palotie and Mark Daly and Howard Jacob and Athena Matakidou and Heiko Runz and Sally John and Robert Plenge and Mark McCarthy and Julie Hunkapiller and Meg Ehm and Dawn Waterworth and Caroline Fox and Anders Malarstig and Jukka Partanen and Kimmo Savinainen and Veli Matti Kosma and Johanna Schleutker and Reijo Laaksonen and Arto Mannermaa and Jukka Peltola and Juha Rinne and Airi Jussila and Pia Isomäki and Tarja Laitinen and Hannu Kankaanranta and Mika Kähönen and Annika Auranen and Hannu Uusitalo and Hannele Uusitalo-Järvinen and Teea Salmi and Jarmo Harju and Tiina Wahlfors and Arto Mannermaa and Juha Kononen and Anastasia Shcherban and Hannele Laivuori and Harri Siirtola and Javier {Gracia Tabuenca} and Jukka Partanen and Matti Pirinen},
  journal = {EUROPEAN JOURNAL OF HUMAN GENETICS},
  month = {10},
  number = {2},
  pages = {309--324},
  title = {An expanded analysis framework for multivariate {GWAS} connects inflammatory biomarkers to functional variants and disease},
  url = {https://doi.org/10.1038/s41431-020-00730-8},
  volume = {29},
  year = {2020},
} 

Mars N et al.(2020). “The role of polygenic risk and susceptibility genes in breast cancer over the course of life.” Nature Communications, 11(1). https://doi.org/10.1038/s41467-020-19966-5.

BibTex record

@Article{Mars:2020,
  author = {Nina Mars and Elisabeth Widén and Sini Kerminen and Tuomo Meretoja and Matti Pirinen and Pietro {della Briotta Parolo} and Priit Palta and Aarno Palotie and Jaakko Kaprio and Heikki Joensuu and Mark J. Daly and Samuli Ripatti and {FinnGen} and Johanna Mäkelä and Annika Auranen and Airi Jussila and Hannele Uusitalo-Järvinen and Hannu Kankaanranta and Hannu Uusitalo and Jukka Peltola and Mika Kähönen and Tarja Laitinen and Teea Salmi and Hannele Laivuori and Anastasia Shcherban and Harri Siirtola},
  journal = {Nature Communications},
  number = {1},
  title = {The role of polygenic risk and susceptibility genes in breast cancer over the course of life},
  url = {https://doi.org/10.1038/s41467-020-19966-5},
  volume = {11},
  year = {2020},
} 

Tanigawa Y et al.(2020). “Rare protein-altering variants in ANGPTL7 lower intraocular pressure and protect against glaucoma.” Plos Genetics, 16(5). https://doi.org/10.1371/journal.pgen.1008682.

BibTex record

@Article{Tanigawa:2020,
  author = {Yosuke Tanigawa and Michael Wainberg and Juha Karjalainen and Tuomo Kiiskinen and Guhan Venkataraman and Susanna Lemmelä and Joni A Turunen and Robert R Graham and Aki S Havulinna and Markus Perola and Aarno Palotie and Mark J Daly and Manuel A Rivas and {FinnGen} and Kimmo Savinainen and Reijo Laaksonen and Jukka Peltola and Airi Jussila and Pia Isomäki and Tarja Laitinen and Hannu Kankaanranta and Mika Kähönen and Annika Auranen and Hannu Uusitalo and Teea Salmi and Harri Siirtola and Javier {Gracia Tabuenca}},
  journal = {Plos Genetics},
  number = {5},
  title = {Rare protein-altering variants in {ANGPTL7} lower intraocular pressure and protect against glaucoma},
  url = {https://doi.org/10.1371/journal.pgen.1008682},
  volume = {16},
  year = {2020},
} 

FinnGen et al.(2020). “Inherited myeloproliferative neoplasm risk affects haematopoietic stem cells.” Nature, 586(7831), 769-775. https://doi.org/10.1038/s41586-020-2786-7.

BibTex record

@Article{FinnGen:2020b,
  author = {{FinnGen} and {23andMe Research Team} and Erik L. Bao and Satish K. Nandakumar and Xiaotian Liao and Alexander G. Bick and Juha Karjalainen and Marcin Tabaka and Olga I. Gan and Aki S. Havulinna and Tuomo T.J. Kiiskinen and Caleb A. Lareau and Aitzkoa L. {de Lapuente Portilla} and Bo Li and Connor Emdin and Veryan Codd and Christopher P. Nelson and Christopher J. Walker and Claire Churchhouse and Albert {de la Chapelle} and Daryl E. Klein and Björn Nilsson and Peter W.F. Wilson and Kelly Cho and Jukka Partanen and Kimmo Savinainen and Veli Matti Kosma and Johanna Schleutker and Reijo Laaksonen and Jukka Peltola and Airi Jussila and Pia Isomäki and Tarja Laitinen and Hannu Kankaanranta and Mika Kähönen and Annika Auranen and Hannu Uusitalo and Hannele Uusitalo-Järvinen and Teea Salmi and Tiina Wahlfors and Arto Mannermaa and Juha Kononen and Hannele Laivuori and Anastasia Shcherban and Harri Siirtola and Javier Gracia Tabuenca},
  journal = {Nature},
  month = {oct},
  number = {7831},
  pages = {769--775},
  title = {Inherited myeloproliferative neoplasm risk affects haematopoietic stem cells},
  url = {https://doi.org/10.1038/s41586-020-2786-7},
  volume = {586},
  year = {2020},
} 

Tabassum R et al.(2019). “Genetic architecture of human plasma lipidome and its link to cardiovascular disease.” Nature Communications, 10(1), 4329. https://doi.org/10.1038/s41467-019-11954-8.

BibTex record

@Article{Tabassum:2019,
  author = {R. Tabassum and J.T. Rämö and P. Ripatti and J.T. Koskela and M. Kurki and H Uusitalo-Järvinen and J. Karjalainen and H Kankaanranta and P. Palta and S. Hassan and Jukka Peltola and J. Nunez-Fontarnau and Mika Kähönen and T.T.J. Kiiskinen and P Isomäki and S. Söderlund and T Salmi and N. Matikainen and A Auranen and M.J. Gerl and Tarja Laitinen and M.A. Surma and K Savinainen and C. Klose and R Laaksonen and N.O. Stitziel and H. Laivuori and A.S. Havulinna and S.K. Service and V. Salomaa and M. Pirinen and M. Jauhiainen and M.J. Daly and N.B. Freimer and A. Palotie and M.-R. Taskinen and K. Simons and S. Ripatti and Project FinnGen and Javier {Gracia Tabuenca} and Harri Siirtola and Hannu Uusitalo},
  journal = {Nature Communications},
  number = {1},
  pages = {4329},
  title = {Genetic architecture of human plasma lipidome and its link to cardiovascular disease},
  url = {https://doi.org/10.1038/s41467-019-11954-8},
  volume = {10},
  year = {2019},
} 

GaSP 2017-2019

“Private and Shared Gaze: Enablers, Applications, Experiences”, funded by Academy of Finland.


Siirtola H (2019). “The Cost of Pie Charts.” In 2019 23rd International Conference Information Visualisation (IV), 151-156. https://doi.org/10.1109/IV.2019.00034.

BibTex record

@InProceedings{Siirtola:2019,
  author = {H. Siirtola},
  booktitle = {2019 23rd International Conference Information Visualisation (IV)},
  month = {July},
  pages = {151--156},
  publisher = {IEEE},
  title = {The Cost of Pie Charts},
  url = {https://doi.org/10.1109/IV.2019.00034},
  year = {2019},
} 

Siirtola H, Räihä K, Istance H, Špakov O (2019). “Dissecting pie charts.” In Lamas D, Loizides F, Nacke L, Petrie H, Winckler M, Zaphiris P (eds.), The 17th IFIP TC.13 International Conference on Human-Computer Interaction (INTERACT 2019), volume II, 688-698. https://doi.org/10.1007/978-3-030-29384-0_41.

BibTex record

@InProceedings{Siirtola:2019a,
  author = {Harri Siirtola and Kari-Jouko Räihä and Howell Istance and Oleg Špakov},
  booktitle = {The 17th IFIP TC.13 International Conference on Human-Computer Interaction (INTERACT 2019)},
  editor = {David Lamas and Fernando Loizides and Lennart Nacke and Helen Petrie and Marco Winckler and Panayiotis Zaphiris},
  pages = {688--698},
  publisher = {Springer},
  title = {Dissecting pie charts},
  url = {https://doi.org/10.1007/978-3-030-29384-0_41},
  volume = {II},
  year = {2019},
} 

Siirtola H, Špakov O, Istance H, Räihä K (2019). “Shared Gaze in Collaborative Visual Search.” International Journal of Human-Computer Interaction. https://www.tandfonline.com/doi/abs/10.1080/10447318.2019.1565746.

BibTex record

@Article{Siirtola:2019b,
  author = {Harri Siirtola and Oleg Špakov and Howell Istance and Kari-Jouko Räihä},
  journal = {International Journal of Human--Computer Interaction},
  title = {Shared Gaze in Collaborative Visual Search},
  url = {https://www.tandfonline.com/doi/abs/10.1080/10447318.2019.1565746},
  year = {2019},
} 

Špakov O et al.(2019). “Two-Way Gaze Sharing in Remote Teaching.” In IFIP Conference on Human-Computer Interaction, 242-251. Springer. https://doi.org/10.1007/978-3-030-29384-0_16.

BibTex record

@InProceedings{Spakov:2019,
  author = {Oleg Špakov and Diederick Niehorster and Howell Istance and Kari-Jouko Räihä and Harri Siirtola},
  booktitle = {IFIP Conference on Human-Computer Interaction},
  organization = {Springer},
  pages = {242--251},
  title = {Two-Way Gaze Sharing in Remote Teaching},
  url = {https://doi.org/10.1007/978-3-030-29384-0_16},
  year = {2019},
} 

Špakov O et al.(2019). “Eye gaze and head gaze in collaborative games.” In 11th ACM Symposium on Eye Tracking Research and Applications, ETRA 2019. https://doi.org/10.1145/3317959.3321489.

BibTex record

@InProceedings{Spakov:2019b,
  author = {O. Špakov and H. Istance and K.-J. Räihä and T. Viitanen and H. Siirtola},
  booktitle = {11th ACM Symposium on Eye Tracking Research and Applications, ETRA 2019},
  title = {Eye gaze and head gaze in collaborative games},
  url = {https://doi.org/10.1145/3317959.3321489},
  year = {2019},
} 

Špakov O et al.(2018). “Improving the performance of eye trackers with limited spatial accuracy and low sampling rates for reading analysis by heuristic fixation-to-word mapping.” Behavior Research Methods, 1-27. https://doi.org/10.3758/s13428-018-1120-x.

BibTex record

@Article{Spakov:2018,
  author = {Oleg Špakov and Howell Istance and Aulikki Hyrskykari and Harri Siirtola and Kari-Jouko Räihä},
  journal = {Behavior Research Methods},
  pages = {1--27},
  title = {Improving the performance of eye trackers with limited spatial accuracy and low sampling rates for reading analysis by heuristic fixation-to-word mapping},
  url = {https://doi.org/10.3758/s13428-018-1120-x},
  year = {2018},
} 

Špakov O et al.(2018). “Enabling unsupervised eye tracker calibration by school children through games.” In Proceedings of the 2018 ACM Symposium on Eye Tracking Research & Applications, 36. ACM. https://doi.org/10.1145/3204493.3204534.

BibTex record

@InProceedings{Spakov:2018a,
  author = {Oleg Špakov and Howell Istance and Tiia Viitanen and Harri Siirtola and Kari-Jouko Räihä},
  booktitle = {Proceedings of the 2018 ACM Symposium on Eye Tracking Research \& Applications},
  organization = {ACM},
  pages = {36},
  title = {Enabling unsupervised eye tracker calibration by school children through games},
  url = {https://doi.org/10.1145/3204493.3204534},
  year = {2018},
} 

Špakov O, Siirtola H, Istance H, Räihä K (2017). “Visualizing the Reading Activity of People Learning to Read.” Journal of Eye Movement Research, 10(5), 5,1-12. https://bop.unibe.ch/index.php/JEMR/article/view/3735.

BibTex record

@Article{Spakov:2017a,
  author = {Oleg Špakov and Harri Siirtola and Howell Istance and Kari-Jouko Räihä},
  journal = {Journal of Eye Movement Research},
  number = {5},
  pages = {5,1--12},
  title = {Visualizing the Reading Activity of People Learning to Read},
  url = {https://bop.unibe.ch/index.php/JEMR/article/view/3735},
  volume = {10},
  year = {2017},
} 

Špakov O, Siirtola H, Istance H, Räihä K (2016). “GazeLaser: A Hands-Free Highlighting Technique for Presentations.” In Proceedings of the 2016 CHI Conference Extended Abstracts on Human Factors in Computing Systems, series CHI EA ’16, 2648-2654. http://doi.acm.org/10.1145/2851581.2892504.

BibTex record

@InProceedings{Spakov:2016,
  address = {New York, NY, USA},
  author = {Oleg Špakov and Harri Siirtola and Howell Istance and Kari-Jouko Räihä},
  booktitle = {Proceedings of the 2016 CHI Conference Extended Abstracts on Human Factors in Computing Systems},
  pages = {2648--2654},
  publisher = {ACM},
  series = {CHI EA '16},
  title = {GazeLaser: A Hands-Free Highlighting Technique for Presentations},
  url = {http://doi.acm.org/10.1145/2851581.2892504},
  year = {2016},
} 

Špakov O et al.(2016). “Field Testing of a Low Cost Eye Tracker with primary school children in the context of developing a gaze aware reading aid.” In The 7th Scandinavian Workshop on Eye Tracking (SWAET 2016). https://homepages.tuni.fi/oleg.spakov/publications/Spakov_SWAET_16.pdf.

BibTex record

@InProceedings{Spakov:2016a,
  author = {Oleg Špakov and Howell Istance and Kari-Jouko Räihä and Harri Siirtola and Inka Hyrskykari},
  booktitle = {The 7th Scandinavian Workshop on Eye Tracking (SWAET 2016)},
  title = {Field Testing of a Low Cost Eye Tracker with primary school children in the context of developing a gaze aware reading aid},
  url = {https://homepages.tuni.fi/oleg.spakov/publications/Spakov_SWAET_16.pdf},
  year = {2016},
} 

Stratas 2016-2017

“Interfacing structured and unstructured data in sociolinguistic research on language change”, funded by Academy of Finland.


Säily T, Vartiainen T, Siirtola H, Nevalainen T (2024). “Unlocking the History of English. Pragmatics, prescriptivism and text types. Selected papers from ICEHL21.” In Caon L, Gordon M, Porck T (eds.), series Current Issues in Linguistic Theory, chapter Changing styles of letter-writing? Evidence from 400 years of early English letters in a POS-tagged corpus. John Benjamins Publishing Company.

BibTex record

@InBook{Saily:2024,
  author = {Tanja Säily and Turo Vartiainen and Harri Siirtola and Terttu Nevalainen},
  chapter = {Changing styles of letter-writing? Evidence from 400 years of early English letters in a POS-tagged corpus},
  editor = {Luisella Caon and Moragh Gordon and Thijs Porck},
  publisher = {John Benjamins Publishing Company},
  series = {Current Issues in Linguistic Theory},
  title = {Unlocking the History of English. Pragmatics, prescriptivism and text types. Selected papers from ICEHL21},
  year = {2024},
} 

Säily T, Vartiainen T, Siirtola H (2017). “Exploring part-of-speech frequencies in a sociohistorical corpus of English.” In Säily T, Nurmi A, Palander-Collin M, Auer A (eds.), Future Paths for Historical Sociolinguistics, series Advances in Historical Sociolinguistics, 23-52. Amsterdam: John Benjamins. http://doi.org/10.1075/ahs.7.

BibTex record

@InCollection{Saily:2017,
  author = {Tanja Säily and Turo Vartiainen and Harri Siirtola},
  booktitle = {Future Paths for Historical Sociolinguistics},
  editor = {Tanja Säily and Arja Nurmi and Minna Palander-Collin and Anita Auer},
  pages = {23--52},
  publisher = {Amsterdam: John Benjamins},
  series = {Advances in Historical Sociolinguistics},
  title = {Exploring part-of-speech frequencies in a sociohistorical corpus of {E}nglish},
  url = {http://doi.org/10.1075/ahs.7},
  year = {2017},
} 

Siirtola H, Säily T, Nevalainen T (2017). “Interactive Principal Component Analysis.” In 2017 21st International Conference Information Visualisation (IV), 416-421. https://doi.org/10.1109/iV.2017.39.

BibTex record

@InProceedings{Siirtola:2017,
  author = {Harri Siirtola and Tanja Säily and Terttu Nevalainen},
  booktitle = {2017 21st International Conference Information Visualisation (IV)},
  month = {July},
  pages = {416--421},
  publisher = {IEEE},
  title = {Interactive Principal Component Analysis},
  url = {https://doi.org/10.1109/iV.2017.39},
  year = {2017},
} 

SKM 2013-2014

“Data analysis and visualization of video images of mechanic function of cardiac cells”


Juhola M et al.(2016). “Computer analysis of calcium cyclings of stem cell-derived cardiomyocytes.” Atlas of Science.

BibTex record

@Article{Juhola:2016,
  author = {Martti Juhola and Heikki Hyyrö and Jari Hyttinen and Katriina Aalto-Setälä and Kirsi Penttinen and Henry Joutsijoki and Kirsi Varpa and Jyri Saarikoski and Jyrki Rasku and Harri Siirtola and Kati Iltanen and Jorma Laurikkala},
  journal = {Atlas of Science},
  title = {Computer analysis of calcium cyclings of stem cell-derived cardiomyocytes},
  year = {2016},
} 

Juhola M et al.(2015). “Signal analysis and classification methods for the calcium transient data of stem cell-derived cardiomyocytes.” Computers in Biology and Medicine, 61, 1-7. http://www.sciencedirect.com/science/article/pii/S0010482515000943.

BibTex record

@Article{Juhola:2015,
  author = {Martti Juhola and Kirsi Penttinen and Henry Joutsijoki and Kirsi Varpa and Jyri Saarikoski and Jyrki Rasku and Harri Siirtola and Kati Iltanen and Jorma Laurikkala and Heikki Hyyrö and Jari Hyttinen and Katriina Aalto-Setälä},
  journal = {Computers in Biology and Medicine},
  pages = {1--7},
  title = {Signal analysis and classification methods for the calcium transient data of stem cell-derived cardiomyocytes},
  url = {http://www.sciencedirect.com/science/article/pii/S0010482515000943},
  volume = {61},
  year = {2015},
} 

Penttinen K et al.(2015). “Novel Analysis Software for Detecting and Classifying Ca\(^2+\) Transient Abnormalities in Stem Cell-Derived Cardiomyocytes.” PLoS ONE, 10(8). http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0135806.

BibTex record

@Article{Penttinen:2015,
  author = {Kirsi Penttinen and Harri Siirtola and Jorge Avalos-Salguero and Tiina Vainio and Martti Juhola and Katriina Aalto-Setälä},
  journal = {PLoS ONE},
  number = {8},
  title = {Novel Analysis Software for Detecting and Classifying {Ca}$^{2+}$ Transient Abnormalities in Stem Cell-Derived Cardiomyocytes},
  url = {http://journals.plos.org/plosone/article?id=10.1371/journal.pone.0135806},
  volume = {10},
  year = {2015},
} 

Joutsijoki H et al.(2014). “Classification of iPSC colony images using hierarchical strategies with support vector machines.” In Computational Intelligence and Data Mining (CIDM), 2014 IEEE Symposium on, 86-92. http://dx.doi.org/10.1109/CIDM.2014.7008152.

BibTex record

@InProceedings{Joutsijoki:2014,
  author = {Henry Joutsijoki and Jyrki Rasku and Markus Haponen and Ivan Baldin and Yulia Gizatdinova and Michelangelo Paci and Jyri Saarikoski and Kirsi Varpa and Harri Siirtola and Jorge Avalos-Salguero and Kati Iltanen and Jorma Laurikkala and Kirsi Penttinen and Jari Hyttinen and Katriina Aalto-Setala and Martti Juhola},
  booktitle = {Computational Intelligence and Data Mining (CIDM), 2014 IEEE Symposium on},
  month = {Dec},
  pages = {86--92},
  title = {Classification of {iPSC} colony images using hierarchical strategies with support vector machines},
  url = {http://dx.doi.org/10.1109/CIDM.2014.7008152},
  year = {2014},
} 

Juhola M et al.(2014). “On Computation of Calcium Cycling Anomalies in Cardiomyocytes Data.” In Proceedings of the 36th Annual International Conference of the IEEE Engineering in Medicine and Biology (EMBC 2014), 1444-1447. https://doi.org/10.1109/EMBC.2014.6943872.

BibTex record

@InProceedings{Juhola:2014,
  author = {Martti Juhola and Henry Joutsijoki and Kirsi Varpa and Jyri Saarikoski and Jyrki Rasku and Kati Iltanen and Jorma Laurikkala and Heikki Hyyrö and Jorge Àvalos-Salguero and Harri Siirtola and Kirsi Kujala and Katriina Aalto-Setälä},
  booktitle = {Proceedings of the 36th Annual International Conference of the IEEE Engineering in Medicine and Biology (EMBC 2014)},
  pages = {1444--1447},
  title = {On Computation of Calcium Cycling Anomalies in Cardiomyocytes Data},
  url = {https://doi.org/10.1109/EMBC.2014.6943872},
  year = {2014},
} 

Penttinen K et al.(2014). “A novel analysis software to detect Ca\(^2+\) signaling abnormalities in cardiomyocytes.” Poster at Cardiac Arrhythmia meeting in Copenhagen 19.-22.5.2014, and Frontiers in Cardiovascular Biology meeting in Barcelona, 4.-6.7.2014.

BibTex record

@Misc{Penttinen:2014,
  author = {Kirsi Penttinen and Jorge Àvalos-Salguero and Harri Siirtola and Martti Juhola and Katriina Aalto-Setälä},
  howpublished = {Poster at Cardiac Arrhythmia meeting in Copenhagen 19.-22.5.2014, and Frontiers in Cardiovascular Biology meeting in Barcelona, 4.-6.7.2014},
  title = {A novel analysis software to detect {Ca$^{2+}$} signaling abnormalities in cardiomyocytes},
  year = {2014},
} 

Siirtola H et al.(2014). “Interactive Biosignal Analysis and Classification.” In Information Visualisation (iV2014), 18th International Conference, 327-332. http://dx.doi.org/10.1109/IV.2014.27.

BibTex record

@InProceedings{Siirtola:2014,
  author = {Harri Siirtola and Jorge Àvalos-Salguero and Kirsi Penttinen and Katriina Aalto-Setälä and Martti Juhola},
  booktitle = {Information Visualisation (iV2014), 18th International Conference},
  pages = {327--332},
  publisher = {IEEE},
  title = {Interactive Biosignal Analysis and Classification},
  url = {http://dx.doi.org/10.1109/IV.2014.27},
  year = {2014},
} 

DAMMOC 2009-2011

“Data mining tools for changing modalities of communication”, funded by Academy of Finland.


Siirtola H, Isokoski P, Säily T, Nevalainen T (2016). “Interactive Text Visualization with Text Variation Explorer.” In 2016 20th International Conference Information Visualisation (iV16), 330-335. https://doi.org/10.1109/IV.2016.57.

BibTex record

@InProceedings{Siirtola:2016,
  author = {Harri Siirtola and Poika Isokoski and Tanja Säily and Terttu Nevalainen},
  booktitle = {2016 20th International Conference Information Visualisation (iV16)},
  month = {7},
  pages = {330--335},
  title = {Interactive Text Visualization with {T}ext {V}ariation {E}xplorer},
  url = {https://doi.org/10.1109/IV.2016.57},
  year = {2016},
} 

Siirtola H, Säily T, Nevalainen T, Räihä K (2014). “Text Variation Explorer: Towards interactive visualization tools for corpus linguistics.” International Journal of Corpus Linguistics, 19(3), 417-429. http://dx.doi.org/10.1075/ijcl.19.3.05sii.

BibTex record

@Article{Siirtola:2014b,
  author = {Harri Siirtola and Tanja Säily and Terttu Nevalainen and Kari-Jouko Räihä},
  journal = {International Journal of Corpus Linguistics},
  number = {3},
  pages = {417--429},
  title = {{T}ext {V}ariation {E}xplorer: Towards interactive visualization tools for corpus linguistics},
  url = {http://dx.doi.org/10.1075/ijcl.19.3.05sii},
  volume = {19},
  year = {2014},
} 

Siirtola H, Räihä K, Säily T, Nevalainen T (2010). “Information Visualization for Corpus Linguistics: Towards Interactive Tools.” In Liu S, Zhou MX, Carenini G, Qu H (eds.), First International Workshop on Intelligent Visual Interfaces for Text Analysis, 33-36. https://helda.helsinki.fi/server/api/core/bitstreams/a2f2b88f-03e7-494f-b7d8-6e17878d6322/content.

BibTex record

@InProceedings{Siirtola:2010,
  author = {Harri Siirtola and Kari-Jouko Räihä and Tanja Säily and Terttu Nevalainen},
  booktitle = {First International Workshop on Intelligent Visual Interfaces for Text Analysis},
  editor = {Shixia Liu and Michelle X. Zhou and Giuseppe Carenini and Huamin Qu},
  pages = {33--36},
  publisher = {ACM},
  title = {Information Visualization for Corpus Linguistics: Towards Interactive Tools},
  url = {https://helda.helsinki.fi/server/api/core/bitstreams/a2f2b88f-03e7-494f-b7d8-6e17878d6322/content},
  year = {2010},
} 

Säily T, Nevalainen T, Siirtola H (2011). “Variation in noun and pronoun frequencies in a sociohistorical corpus of English.” Literary and Linguistic Computing, 26(2), 167-188. http://dx.doi.org/10.1093/llc/fqr004.

BibTex record

@Article{Saily:2011,
  author = {Tanja Säily and Terttu Nevalainen and Harri Siirtola},
  journal = {Literary and Linguistic Computing},
  number = {2},
  pages = {167--188},
  title = {Variation in noun and pronoun frequencies in a sociohistorical corpus of {English}},
  url = {http://dx.doi.org/10.1093/llc/fqr004},
  volume = {26},
  year = {2011},
} 

Siirtola H, Nevalainen T, Säily T, Räihä K (2011). “Visualisation of text corpora: A case study of the PCEEC.” In Nevalainen T, Fitzmaurice SM (eds.), How to Deal with Data: Problems and Approaches to the Investigation of the English Language over Time and Space. Studies in Variation, Contacts, and Change in English, volume 7. Helsinki: VARIENG. http://www.helsinki.fi/varieng/journal/volumes/07/siirtola%5C_et%5C_al/.

BibTex record

@InCollection{Siirtola:2011a,
  author = {Harri Siirtola and Terttu Nevalainen and Tanja Säily and Kari-Jouko Räihä},
  booktitle = {How to Deal with Data: Problems and Approaches to the Investigation of the English Language over Time and Space. Studies in Variation, Contacts, and Change in English},
  editor = {Terttu Nevalainen and Susan M. Fitzmaurice},
  publisher = {Helsinki: VARIENG},
  title = {Visualisation of text corpora: A case study of the {PCEEC}},
  url = {http://www.helsinki.fi/varieng/journal/volumes/07/siirtola\_et\_al/},
  volume = {7},
  year = {2011},
} 

TOPI 2011-2014

“Research and teaching cooperation in the area of human-centered technology”, funded by The Federation of Finnish Technology Industries, The Centennial Foundation, a joint development project by University of Tampere and Tampere University of Technology. In the beginning of 2019 these two universities were joined and became Tampere University.


Siirtola H, Räihä K, Surakka V (2013). “Interactive Curriculum Visualization.” In Information Visualisation (IV), 2013 17th International Conference, 108-117. http://dx.doi.org/10.1109/IV.2013.13.

BibTex record

@InProceedings{Siirtola:2013,
  author = {Harri Siirtola and Kari-Jouko Räihä and Veikko Surakka},
  booktitle = {Information Visualisation (IV), 2013 17th International Conference},
  pages = {108--117},
  publisher = {IEEE},
  title = {Interactive Curriculum Visualization},
  url = {http://dx.doi.org/10.1109/IV.2013.13},
  year = {2013},
} 

Vainio T, Siirtola H, Surakka V (2010). “Opetusyhteistyön kehittäminen ihmisen ja teknologian välisessä vuorovaikutuksessa Tampereen yliopistoissa.” Peda-Forum, 17(1), 18-21. http://www.peda-forum.fi/file.php?107.

BibTex record

@Article{Vainio:2010,
  author = {Teija Vainio and Harri Siirtola and Veikko Surakka},
  journal = {Peda-Forum},
  number = {1},
  pages = {18--21},
  title = {Opetusyhteisty{\"o}n kehitt{\"a}minen ihmisen ja teknologian v{\"a}lisess{\"a} vuorovaikutuksessa Tampereen yliopistoissa},
  url = {http://www.peda-forum.fi/file.php?107},
  volume = {17},
  year = {2010},
} 

Others


Siirtola H (2014). “Bars, Pies, Doughnuts & Tables: Visualization of Proportions.” In Proceedings of the 28th International BCS Human Computer Interaction Conference on HCI 2014 - Sand, Sea and Sky - Holiday HCI, series BCS-HCI ’14, 240-245. http://dx.doi.org/10.14236/ewic/hci2014.30.

BibTex record

@InProceedings{Siirtola:2014a,
  address = {UK},
  author = {Harri Siirtola},
  booktitle = {Proceedings of the 28th International BCS Human Computer Interaction Conference on HCI 2014 - Sand, Sea and Sky - Holiday HCI},
  pages = {240--245},
  publisher = {BCS},
  series = {BCS-HCI '14},
  title = {Bars, Pies, Doughnuts \& Tables: Visualization of Proportions},
  url = {http://dx.doi.org/10.14236/ewic/hci2014.30},
  year = {2014},
} 

Holm J, Siirtola H (2012). “A Comparison of Methods for Visualizing Musical Genres.” In Information Visualisation (IV), 2012 16th International Conference on, 636-645. http://doi.ieeecomputersociety.org/10.1109/IV.2012.107.

BibTex record

@InProceedings{Holm:2012,
  author = {Jukka Holm and Harri Siirtola},
  booktitle = {Information Visualisation (IV), 2012 16th International Conference on},
  pages = {636--645},
  publisher = {IEEE},
  title = {A Comparison of Methods for Visualizing Musical Genres},
  url = {http://doi.ieeecomputersociety.org/10.1109/IV.2012.107},
  year = {2012},
} 

Holm J, Siirtola H, Laaksonen L (2010). “Associating Avatars with Musical Genres.” In Proceedings of 14th International Conference Information Visualisation, IV 2010, 186-193. http://doi.ieeecomputersociety.org/10.1109/IV.2010.36.

BibTex record

@InProceedings{Holm:2010,
  author = {Jukka Holm and Harri Siirtola and Lauri Laaksonen},
  booktitle = {Proceedings of 14th International Conference Information Visualisation, IV 2010},
  pages = {186--193},
  publisher = {IEEE},
  title = {Associating Avatars with Musical Genres},
  url = {http://doi.ieeecomputersociety.org/10.1109/IV.2010.36},
  year = {2010},
} 

Vanhala T et al.(2010). “Virtual proximity and facial expressions of computer agents regulate human emotions and attention.” Computer Animation and Virtual Worlds, 21(3-4), 215-224. http://dx.doi.org/10.1002/cav.366.

BibTex record

@Article{Vanhala:2010,
  author = {Toni Vanhala and Veikko Surakka and Harri Siirtola and Kari-Jouko Räihä and Benoît Morel and Laurent Ach},
  journal = {Computer Animation and Virtual Worlds},
  number = {3-4},
  pages = {215--224},
  title = {Virtual proximity and facial expressions of computer agents regulate human emotions and attention},
  url = {http://dx.doi.org/10.1002/cav.366},
  volume = {21},
  year = {2010},
} 

Siirtola H, Laivo T, Heimonen T, Räihä K (2009). “Visual Perception of Parallel Coordinate Visualizations.” In IV09: Proceedings of the Thirteenth International Conference on Information Visualization, 3-9. http://doi.ieeecomputersociety.org/10.1109/IV.2009.25.

BibTex record

@InProceedings{Siirtola:2009,
  author = {Harri Siirtola and Tuuli Laivo and Tomi Heimonen and Kari-Jouko Räihä},
  booktitle = {{IV09: Proceedings of the Thirteenth International Conference on Information Visualization}},
  pages = {3--9},
  publisher = {IEEE Computer Society},
  title = {Visual Perception of Parallel Coordinate Visualizations},
  url = {http://doi.ieeecomputersociety.org/10.1109/IV.2009.25},
  year = {2009},
} 

Heimonen T, Siirtola H (2009). “Visualizing Query Occurrence in Mobile Web Search Interfaces.” In IV09: 13th International Conference on Information Visualisation, 639-644. http://doi.ieeecomputersociety.org/10.1109/IV.2009.16.

BibTex record

@InProceedings{Heimonen:2009,
  author = {Tomi Heimonen and Harri Siirtola},
  booktitle = {IV09: 13th International Conference on Information Visualisation},
  pages = {639--644},
  publisher = {IEEE Computer Society},
  title = {Visualizing Query Occurrence in Mobile Web Search Interfaces},
  url = {http://doi.ieeecomputersociety.org/10.1109/IV.2009.16},
  year = {2009},
} 

Holm J, Aaltonen A, Siirtola H (2009). “Associating Colours with Musical Genres.” Journal of New Music Research, 38(1), 87-100. http://dx.doi.org/10.1080/09298210902940094.

BibTex record

@Article{Holm:2009,
  author = {Jukka Holm and Antti Aaltonen and Harri Siirtola},
  journal = {Journal of New Music Research},
  number = {1},
  pages = {87--100},
  title = {Associating Colours with Musical Genres},
  url = {http://dx.doi.org/10.1080/09298210902940094},
  volume = {38},
  year = {2009},
} 

Siirtola H, Räihä K, Surakka V, Vanhala T (2008). “Flexible Method for Producing Static Visualizations of Log Data.” In Information Visualisation, 2008. IV ’08. 12th International Conference, 127-132. http://dx.doi.org/10.1109/IV.2008.42.

BibTex record

@InProceedings{Siirtola:2008,
  author = {Harri Siirtola and Kari-Jouko Räihä and Veikko Surakka and Toni Vanhala},
  booktitle = {Information Visualisation, 2008. IV '08. 12th International Conference},
  pages = {127--132},
  publisher = {IEEE Computer Society},
  title = {Flexible Method for Producing Static Visualizations of Log Data},
  url = {http://dx.doi.org/10.1109/IV.2008.42},
  year = {2008},
} 

Siirtola H (2007). Interactive Visualization of Multidimensional Data. Dissertations in Interactive Technology, Number 7, University of Tampere. http://urn.fi/urn:isbn:978-951-44-6939-8.

BibTex record

@PhdThesis{Siirtola:2007,
  author = {Harri Siirtola},
  organization = {Faculty of Information Sciences},
  school = {University of Tampere},
  title = {Interactive Visualization of Multidimensional Data},
  type = {{Dissertations in Interactive Technology, Number 7}},
  url = {http://urn.fi/urn:isbn:978-951-44-6939-8},
  year = {2007},
} 

Siirtola H, Räihä K (2006). “Interacting with Parallel Coordinates.” Interacting with Computers, 18(6), 1278-1309. http://dx.doi.org/10.1016/j.intcom.2006.03.006.

BibTex record

@Article{Siirtola:2006,
  author = {Harri Siirtola and Kari-Jouko Räihä},
  journal = {Interacting with Computers},
  number = {6},
  pages = {1278--1309},
  title = {Interacting with Parallel Coordinates},
  url = {http://dx.doi.org/10.1016/j.intcom.2006.03.006},
  volume = {18},
  year = {2006},
} 

Siirtola H, Mäkinen E (2005). “Constructing and Reconstructing the Reorderable Matrix.” Information Visualization, 4(1), 32-48. http://dx.doi.org/10.1057/palgrave.ivs.9500086.

BibTex record

@Article{Siirtola:2005,
  author = {Harri Siirtola and Erkki Mäkinen},
  journal = {Information Visualization},
  number = {1},
  pages = {32--48},
  title = {Constructing and Reconstructing the Reorderable Matrix},
  url = {http://dx.doi.org/10.1057/palgrave.ivs.9500086},
  volume = {4},
  year = {2005},
} 

Aula A, Siirtola H (2005). “Human-Computer Interaction - INTERACT 2005.” In Costabile M, Paternò F (eds.), volume 3585 series Lecture Notes in Computer Science, chapter Hundreds of Folders or One Ugly Pile - Strategies for Information Search and Re-access, 946-949. Springer Berlin Heidelberg. http://dx.doi.org/10.1007/11555261%5C_78.

BibTex record

@InBook{Aula:2005,
  author = {Anne Aula and Harri Siirtola},
  chapter = {Hundreds of Folders or One Ugly Pile -- Strategies for Information Search and Re-access},
  editor = {MariaFrancesca Costabile and Fabio Paternò},
  pages = {946--949},
  publisher = {Springer Berlin Heidelberg},
  series = {Lecture Notes in Computer Science},
  title = {Human-Computer Interaction - INTERACT 2005},
  url = {http://dx.doi.org/10.1007/11555261\_78},
  volume = {3585},
  year = {2005},
} 

Siirtola H (2005). “The effect of data-relatedness in interactive glyphs.” In IV’05: Proceedings of the Ninth International Conference on Information Visualization, 869-876. http://dx.doi.org/10.1109/IV.2005.123.

BibTex record

@InProceedings{Siirtola:2005b,
  author = {Harri Siirtola},
  booktitle = {{IV'05: Proceedings of the Ninth International Conference on Information Visualization}},
  pages = {869--876},
  publisher = {IEEE Computer Society},
  title = {The effect of data-relatedness in interactive glyphs},
  url = {http://dx.doi.org/10.1109/IV.2005.123},
  year = {2005},
} 

Mäkinen E, Siirtola H (2005). “The barycenter heuristic and the Reorderable Matrix.” Informatica, 29, 357-363. http://www.informatica.si/PDF/29-3/13\_Makinen-The%20Barycenter%20Heuristic.…pdf.

BibTex record

@Article{Makinen:2005,
  author = {Erkki Mäkinen and Harri Siirtola},
  journal = {Informatica},
  pages = {357--363},
  title = {The barycenter heuristic and the Reorderable Matrix},
  url = {http://www.informatica.si/PDF/29-3/13\_Makinen-The\%20Barycenter\%20Heuristic....pdf},
  volume = {29},
  year = {2005},
} 

Siirtola H (2004). “Interactive Cluster Analysis.” In IV’04: Proceedings of the Eighth International Conference on Information Visualization, 471-476. http://doi.ieeecomputersociety.org/10.1109/IV.2004.1320186.

BibTex record

@InProceedings{Siirtola:2004,
  author = {Harri Siirtola},
  booktitle = {{IV'04: Proceedings of the Eighth International Conference on Information Visualization}},
  pages = {471--476},
  publisher = {IEEE Computer Society Press},
  title = {Interactive Cluster Analysis},
  url = {http://doi.ieeecomputersociety.org/10.1109/IV.2004.1320186},
  year = {2004},
} 

Siirtola H (2003). “Combining Parallel Coordinates with the Reorderable Matrix.” In CMV’03: Proceedings of the International Conference on Coordinated & Multiple Views in Exploratory Visualization, 63-74. http://doi.ieeecomputersociety.org/10.1109/CMV.2003.1215004.

BibTex record

@InProceedings{Siirtola:2003,
  author = {Harri Siirtola},
  booktitle = {{CMV'03: Proceedings of the International Conference on Coordinated \& Multiple Views in Exploratory Visualization}},
  pages = {63--74},
  publisher = {IEEE Computer Society},
  title = {Combining Parallel Coordinates with the Reorderable Matrix},
  url = {http://doi.ieeecomputersociety.org/10.1109/CMV.2003.1215004},
  year = {2003},
} 

Mäkinen E, Siirtola H (2000). “Reordering the reorderable matrix as an algorithmic problem.” In Diagrams 2000: Proceedings of the First International Conference on Theory and Application of Diagrams, 453-467. http://link.springer.com/content/pdf/10.1007/3-540-44590-0%5C_37.pdf.

BibTex record

@InProceedings{Makinen:2000,
  author = {Erkki Mäkinen and Harri Siirtola},
  booktitle = {{Diagrams 2000: Proceedings of the First International Conference on Theory and Application of Diagrams}},
  pages = {453--467},
  publisher = {Lecture Notes in Artificial Intelligence 1889, Springer-Verlag},
  title = {Reordering the reorderable matrix as an algorithmic problem},
  url = {http://link.springer.com/content/pdf/10.1007/3-540-44590-0\_37.pdf},
  year = {2000},
} 

Siirtola H (2000). “Direct Manipulation of Parallel Coordinates.” In IV’2000: Proceedings of the International Conference on Information Visualization, 373-378. http://dx.doi.org/10.1109/IV.2000.859784.

BibTex record

@InProceedings{Siirtola:2000,
  author = {Harri Siirtola},
  booktitle = {{IV'2000: Proceedings of the International Conference on Information Visualization}},
  pages = {373--378},
  publisher = {IEEE Computer Society},
  title = {Direct Manipulation of Parallel Coordinates},
  url = {http://dx.doi.org/10.1109/IV.2000.859784},
  year = {2000},
} 

Siirtola H (2000). “Direct manipulation of parallel coordinates.” In CHI EA ’00: CHI ’00 extended abstracts on Human factors in computing systems, 119-120. http://dx.doi.org/10.1145/633292.633361.

BibTex record

@InProceedings{Siirtola:2000b,
  address = {New York, NY, USA},
  author = {Harri Siirtola},
  booktitle = {CHI EA '00: CHI '00 extended abstracts on Human factors in computing systems},
  pages = {119--120},
  publisher = {ACM},
  title = {Direct manipulation of parallel coordinates},
  url = {http://dx.doi.org/10.1145/633292.633361},
  year = {2000},
} 

Siirtola H (1999). “Interaction with the Reorderable Matrix.” In IV’99: Proceedings of the International Conference on Information Visualization, 272-277. http://dx.doi.org/10.1109/IV.1999.781570.

BibTex record

@InProceedings{Siirtola:1999,
  author = {Harri Siirtola},
  booktitle = {{IV'99: Proceedings of the International Conference on Information Visualization}},
  pages = {272--277},
  publisher = {IEEE Computer Society},
  title = {Interaction with the Reorderable Matrix},
  url = {http://dx.doi.org/10.1109/IV.1999.781570},
  year = {1999},
}